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Figure 4 | Journal of Biological Engineering

Figure 4

From: Fan-out in gene regulatory networks

Figure 4

Frequency response of the module interface process shown in Fig. 3A. An oscillatory signal is applied at V in with different frequencies (A). The signal gain is defined by the ratio of the oscillation amplitude of the output signal (V out ) to that of the input (Vin): g ( ω ) = Δ V o u t ( ω ) Δ V i n ( ω ) , and can be well approximated by g ( ω ) = 1 + ω 2 / ( R C T ) 2 − 1 [31] with C T the total capacitance. As the number of the promoters that the output (TF) signal drives (regulates) increases, the cut-off frequency (ω c = 1/RC T ) decreases (B). The output signal is desired to be operated within a certain frequency range, e.g., between 0 and 1 hour-1. Here the maximum operating frequency ω max is 1 hour-1. When the cut-off frequency matches the maximum operating frequency, the corresponding number of the promoters is defined as the fan-out (C). Parameters of the model: K d = 1 nM [k on = 10(1/nM/hour), k off = 10 (1/hour)], γ = 2(1/ hour), α = 20(nM/hour). Here the volume of a host cell is assumed roughly equal to 1 μ m3. Under the assumption, a copy number of one corresponds to 1 nM.

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