Skip to main content

Table 3 Analysis of population dynamics

From: Computational identification of adaptive mutants using the VERT system

System

AE/gen-color

Rate of PEX†

AE Length (s)

Human Annotation

   

C. albicans

0.015 (0.007)

0.0058 (0.016)

3.26 (2.12)

E. coli

0.017 (0.005)

0.0065 (0.009)

1.80 (0.96)

S. cerevisae

0.008 (0.005)

0.005 (0.005)

4.124 (3.47)

Model predictions

   

C. albicans

0.016 (0.009)

0.010 (0.015)

3.83 (2.79)

E. coli

0.013 (0.010)

0.005 (0.004)

2.46 (1.62)

S. cerevisae

0.009 (0.005)

0.005 (0.005)

4.33 (3.43)

  1. Properties of adaptive events (AE) are calculated from the human annotated data and the predictions of the PSM to highlight differences between the annotation methods. The average value and (standard deviation) are provided for each parameter of interest. There are not statistically significant differences between each type of chemostat (i.e. E. coli versus yeast) at the α = 0.05 level. †PEX: p opulation ex pansion, defined as ΔP ij /Δt (t: generations).