From: Rational design of modular circuits for gene transcription: A test of the bottom-up approach
 | Description | Value | Units | |
---|---|---|---|---|
I | IPTG concentration | Â | mM | |
G | Concentration of GFP protein | Â | molecules per cell | |
L F | Free LacI molecules, i.e. not bound to operator sites or IPTG molecule | Â | molecules per cell | |
L I | LacI molecules bound to IPTG | Â | molecules per cell | |
M G | mRNA molecules of GFP | Â | molecules per cell | |
M L | mRNA molecules of LacI | Â | molecules per cell | |
| Free Repressor/Reporter plasmids | Â | plasmids per cell | |
| Repressor/Reporter plasmids bound to LacI molecules | Â | plasmids per cell | |
| Repressor/Reporter plasmids bound to induced LacI molecules | Â | plasmids per cell | |
| Number of Reporter plasmids per cell | 80 | plasmids per cell | |
| Number of Repressor plasmids per cell |
| plasmids per cell | |
λ G/L | Protein degradation rate | 0.0214§ | min-1 | |
| mRNA degradation rate | 0.271[39] | min-1 | |
α G | GFP rate of synthesis | 540λ G = 11.54[40] | min-1 | |
Α L | LacI rate of synthesis | α G /4 = 2.88 | min-1 | |
| GFP transcription rate | 0.56†| min-1 | |
| LacI transcription rate |
| min-1 | |
| Equilibrium binding constant of the complex LacI-Ox |
| 0.13[41] | molecules per cell |
 |  |
| 1.63[41] | molecules per cell |
 |  |
| 0.0394†| molecules per cell |
| Equilibrium binding constant for the binding of induced LacI molecule to the operator sequence Ox |
| 25336†| molecules per cell |
 |  |
| ∞ | molecules per cell |
 |  |
| 313†| molecules per cell |
K LI | Equilibrium binding constant for the binding IPTG-LacI | 0.2890†| mM | |
n | Cooperativity of the binding LacI-IPTG | 1.8688†|  | |
Ï„ LI | Time constant of LacI binding to the operator sequences | 0.02[43] | min | |
Ï„ DI | Time constant of induced-LacI binding to the operator sequences | * | min | |
Ï„ DL | Time constant of the binding LacI-IPTG | * | min |